PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P07930_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 237aa    MW: 25489.9 Da    PI: 7.8416
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P07930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP76.48e-241472470
                    TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70
                           ++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg++s++a
  GSMUA_Achr6P07930_001  1 MPALCAARIFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGSIPA 47
                           9*****************************************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.954139IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-18163IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHKT DGETIQWLLQ QAEPSIIAAT GSGSIPALVL TSRANWATPG  60
SHLGRSHPEF WMTPVDGSNA SFLQSATAAV PLVSNMPRFG FSGLELPTSG INPMTFVPLL  120
GGQRQPMPGL EISVSQHGQV GIFKPQPLSQ FYQHIAQGSG NSAGSYQLQQ QEQEQQPKFP  180
SLLINGIKPS PSDLHRTDED ASKPTVGVSS PSLYSSSSTL PRQIIPNQHR LLLSLHP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403775.11e-110PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD52e-34TCP20_ARATH; Transcription factor TCP20
TrEMBLM0T5421e-170M0T542_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P07930_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-36TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]