PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26850_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 191aa    MW: 20434 Da    PI: 10.272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-201363155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++++GVr ++ +gr++AeIrdp +   r r++lg+f+taeeAa+a++aa+++++g
  GSMUA_Achr5P26850_001 13 TRFRGVRKRR-WGRFAAEIRDPAK---RSRVWLGTFDTAEEAARAYDAAALRFRG 63
                           589****887.**********844...6************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-181372No hitNo description
PfamPF008471.6E-131363IPR001471AP2/ERF domain
SMARTSM003803.2E-341477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-301471IPR001471AP2/ERF domain
PROSITE profilePS5103224.0521471IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-211471IPR016177DNA-binding domain
PRINTSPR003671.4E-101526IPR001471AP2/ERF domain
PRINTSPR003671.4E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSPSAARGEL RETRFRGVRK RRWGRFAAEI RDPAKRSRVW LGTFDTAEEA ARAYDAAALR  60
FRGTKAKTNF AYPGPLYAPV VAGSVPSSPS NSNAESSTPS PKAGAVTALL PLDLELGHAS  120
ARFSFPHRPA SSAREATVSH HCLALDRAAA LTGMSVCDRL QSASDSVSPA EPTMRLPFDV  180
DLNLSPPSEV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-191570662ATERF1
3gcc_A1e-191570662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402792.11e-135PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotO803407e-31ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLM0T2101e-135M0T210_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P26850_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-12erf domain protein 9