PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P25620_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 544aa    MW: 59411.5 Da    PI: 7.1578
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P25620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14204263155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e Aa+a++ a++k++g
  GSMUA_Achr5P25620_001 204 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEERAARAYDLAALKYWG 263
                            57*******************666664478446*************************98 PP

2AP235.33e-11308362355
                    AP2   3 ykGV.....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+G+     +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ +++g
  GSMUA_Achr5P25620_001 308 YRGIymspcFRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIRFRG 362
                            66666666668999*******988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-11204263IPR001471AP2/ERF domain
CDDcd000184.09E-20204273No hitNo description
SuperFamilySSF541714.12E-17204273IPR016177DNA-binding domain
PROSITE profilePS5103219.151205271IPR001471AP2/ERF domain
SMARTSM003805.0E-28205277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15205271IPR001471AP2/ERF domain
PRINTSPR003673.2E-6206217IPR001471AP2/ERF domain
CDDcd000185.99E-21306370No hitNo description
PROSITE profilePS5103218.413307370IPR001471AP2/ERF domain
SMARTSM003801.1E-26307376IPR001471AP2/ERF domain
PfamPF008471.3E-6317362IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15318371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-16318370IPR001471AP2/ERF domain
PRINTSPR003673.2E-6352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASMNHHWLA FSLSPQELPS SQSHQHHPGD DVSTDCFGLY ASFGLVDALN RPHHQTQDWN  60
SKSLDFDGGA SELSMLVGSN GSRNNAVEEE PKLEDFLGDA CGSRGMYMFS DTSSVTSSAR  120
DGALMGNPIG VSTMKTWLRS QPTPYQQANN SSSDTAGATT GQASVVLSMS MSTGSQSGSA  180
LDSQTGAITA APRRSVDTFG QRSSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQVY  240
LGGYDKEERA ARAYDLAALK YWGPTTTTNF PINNYEKELE EMQHMTRQEF IASIRRKSSG  300
FSRGASIYRG IYMSPCFRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIRF  360
RGLSAVTNFD MNRYDVKSIL ESNTVCGTGK RLRDVASEHA EHAGRRTIAF HRPQPLELSG  420
LPCKQEEDAV VAAAHGLGGL HQLHLGTDTH SFFQPNSALH HLASVDSSWL EHSTGSNSVT  480
YNGVMAGSSG SYQGSEKTFY LSQQSPSGSA TWTPAAAQAM AWRSNCMAAA AGHGTPLFTV  540
WDDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408926e-52AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402698.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM0T1N70.0M0T1N7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P25620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-125AP2 family protein