PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P04670_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 360aa    MW: 40886.6 Da    PI: 7.9741
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P04670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24e-1343100156
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                            s ++GV++++++gr++A+++d  ++n  ++k+   g+++ +e Aa a++ a++k++g+
  GSMUA_Achr5P04670_001  43 SVFRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGKQGSYDDEEAAAHAYDLAALKYWGH 100
                            689******************99998887755555********************997 PP

2AP251.72.2e-16142193155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV +++ +grW+A+I  +s    +k+ +lg++ t eeAa a++ a+ +++g
  GSMUA_Achr5P04670_001 142 SKYRGVARHHHNGRWEARIGRVSG---NKYLYLGTYATQEEAATAYDIAAIEYRG 193
                            89****99**********999754...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1543109IPR016177DNA-binding domain
PfamPF008471.4E-843100IPR001471AP2/ERF domain
SMARTSM003801.1E-1944113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-1344109IPR001471AP2/ERF domain
PROSITE profilePS5103218.38644107IPR001471AP2/ERF domain
PRINTSPR003671.5E-54556IPR001471AP2/ERF domain
CDDcd000182.33E-24142203No hitNo description
PfamPF008471.5E-11142193IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17142203IPR016177DNA-binding domain
SMARTSM003801.3E-26143207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-18143202IPR001471AP2/ERF domain
PROSITE profilePS5103218.439143201IPR001471AP2/ERF domain
PRINTSPR003671.5E-5183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGKIQKNNSG NQKNVDKNDS SSSMKMKRTR RSVPRDSPSQ RSSVFRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGKQGSY DDEEAAAHAY DLAALKYWGH DTILNFPTSA YQEELKDMEN  120
QSREEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVSGNKYLY LGTYATQEEA  180
ATAYDIAAIE YRGLNAVTNF DLSRYIKWLQ PKGLDAEPGS HGGAAQSMQQ QDGISMLEKT  240
SAESSSTSST PGCDDKPTGC SFPDYIQTYF ECQDNGGFIE EEDSIFGDLS TLISPITDLK  300
GGKLRQKVDY TEEQNIDSGR RQLFFFLSFF FLPKEMIKLI IDSFLFPSMW IVIVLPLPTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399575.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM0SVP60.0M0SVP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P04670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-90AP2 family protein