PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03320_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 189aa    MW: 19416.2 Da    PI: 9.3758
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP80.16e-251902496
                    TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg................ka 90
                           ++a caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++               +++sss+                ++
  GSMUA_Achr5P03320_001  1 MPAACAARIFQLTRELGHKSDGETIKWLLEQAEPAIIAATGTGTVPAIATnvggtlqI------PTEASSSApltstsapaadggdapNK 84
                           9*****************************************7777744421111111......11111111222111122222222222 PP

                    TCP 91 aksaak 96
                           ++++ +
  GSMUA_Achr5P03320_001 85 RRKKLQ 90
                           222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-19175IPR005333Transcription factor, TCP
PROSITE profilePS5136920.134139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT NVGGTLQIPT  60
EASSSAPLTS TSAPAADGGD APNKRRKKLQ PSRSEGSVAG YFPLQDPLLP GGGTISIPAG  120
LAPLGASGTQ AVIPGCNSRL VNCIFRNSLD KTLVLLVGPS RLPSITKQTG EACSYASWLT  180
NVRKSNLVL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399382.14e-87PREDICTED: transcription factor PCF2-like
SwissprotA2YXQ11e-39PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-39PCF2_ORYSJ; Transcription factor PCF2
TrEMBLM0SVB11e-132M0SVB1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03320_0011e-133(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-31TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]