PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P02530_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 382aa    MW: 41438.8 Da    PI: 7.99
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P02530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.38.3e-3670180289
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 
                             g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG d++sk+ieWL+++a +ai el+ +               + ++  ec+
  GSMUA_Achr5P02530_001  70 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGCDQPSKAIEWLIKAAAAAINELPPLdgflkpphpsgeeimEINPDVECS 157
                            689*****************************************************************99888888877666667785 PP

                    TCP  75 aesssssasnsssg........k 89 
                             +++++++++ss++        +
  GSMUA_Achr5P02530_001 158 YNQQQQQQHQSSKSgcsstseiS 180
                            55555555544444333322210 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3471180IPR005333Transcription factor, TCP
PROSITE profilePS5136932.25172130IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELEENDHAS KRSRMMCNGS QAAKIGRKQL ARDDDEDGEK RKGEGGADAN RIGSWQHYPS  60
SRIFRVSRAS GGKDRHSKVY TAKGLRDRRV RLSVSTAIQF YDLQDRLGCD QPSKAIEWLI  120
KAAAAAINEL PPLDGFLKPP HPSGEEIMEI NPDVECSYNQ QQQQQHQSSK SGCSSTSEIS  180
KGSNPNPYPN PQTPSLTTTF TELLTGGGSQ ISTADYFVQA GLFAQPQKSH QLPSSFPSQS  240
HFGNRSPMGM LPFNIAATGH HPEMQQLFLQ DHVFPVSAVA ASGDYNLNFS ISSGIAGFSR  300
GTLQSNSPAQ MPQQHHHSHN NLPRLSSTVD GSNLQFFFGS AAGSAAAATS AENQFPAGMD  360
GGLQLCYGDG YRHSDLKGKG KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2577131155Putative transcription factor PCF6
5zkt_B4e-2577131155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397405.11e-178PREDICTED: transcription factor PCF6-like
SwissprotQ10CE89e-63PCF6_ORYSJ; Transcription factor PCF6
TrEMBLM0SV320.0M0SV32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P02530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2