PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P31520_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 380aa    MW: 40818.7 Da    PI: 7.8405
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P31520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.31.3e-34691852111
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 
                             g+kdrhsk+hT++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ +               +      ++
  GSMUA_Achr4P31520_001  69 SGGKDRHSKVHTARGVRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAISELPPLdgfpkppypnmvetmK------AN 150
                            689*************************************************************9887666665554331......12 PP

                    TCP  75 aesssssasnsssgkaaksaakskksqksaasalnla 111
                            ++++ss +++++  + ++++ +s+ s++s+ s+l+l+
  GSMUA_Achr4P31520_001 151 PDTESSYNQQQQ--HMSTKSGCSSTSETSKGSVLSLS 185
                            222222222221..22233334444444444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3570195IPR005333Transcription factor, TCP
PROSITE profilePS5136932.76271129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MELEESNHAS KRFRVVGNGS QTAKIGRKEH REDDEEGRER KGRGGDDANG TAPWEHHLSS  60
RIFRVSRASG GKDRHSKVHT ARGVRDRRVR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK  120
AAAAAISELP PLDGFPKPPY PNMVETMKAN PDTESSYNQQ QQHMSTKSGC SSTSETSKGS  180
VLSLSRLNPQ TSFTELLTGS GGGGGDVSNN ANATTVAAGA ENTPQESHQH PPTFSSQSHF  240
GNSSPMGMLP FNIATTGDHP EMQQLFLQDN LFPISAVAAT GDYNLSFSIS SGLAGFSRGT  300
LQSNSSAQLP QQHHHNHNHL PRLSSTVDGS NLQFFGAAAG SARAGAGAEN QYPAVCDGRL  360
QLCYGGDGYR HSDLKGKGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2576130155Putative transcription factor PCF6
5zkt_B2e-2576130155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397405.10.0PREDICTED: transcription factor PCF6-like
TrEMBLM0STR40.0M0STR4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P31520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2