PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P30820_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 271aa    MW: 29777.9 Da    PI: 8.491
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P30820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-19146179134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  GSMUA_Achr4P30820_001 146 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 179
                            *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.61E-13140181No hitNo description
SMARTSM004018.3E-20140191IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466144176IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15144179IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.57E-12145173No hitNo description
PfamPF003203.5E-17146179IPR000679Zinc finger, GATA-type
PROSITE patternPS003440146171IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSPLDLNQVC VIPIEEGSHL PPYAIANPSS SFSCPHLFGV RHDERGGYCI GHHLHQPQQE  60
PEEEFQIAGS SVEYMTQRPA DPSDGITEEE EPARPGRWMS PKMCFVRKTM NSTHIVVSEP  120
RGNRLVSEFS TYYRSSSSPG GIIRVCSDCN TTKTPLWRSG PRGPKSLCNA CGIRQRKARR  180
AMAAAALNGG LVPADAPSQV QKEKELDVDR TLPFKKRCKV DTASSMTATK LCFGEAKLSS  240
NRSSAIKKVF PQEERDAAIL LMALSCGLIR S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398824.20.0PREDICTED: putative GATA transcription factor 22
TrEMBLM0STJ40.0M0STJ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P30820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-23cytokinin-responsive gata factor 1