PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P27220_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 220aa    MW: 22119.2 Da    PI: 8.7119
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P27220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP79.96.9e-2519324122
                    TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasalnla 111
                            ++a caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++        +++ +++ +a+s+a+  ++++ aa   + +
  GSMUA_Achr4P27220_001   1 MPAACAARIFQLTRELGHKSDGETIKWLLEQAEPAIIAATGTGTVPAIAT------TVGGTLKIPTEAPSSAPVTSTSAAAADDPAAN 82 
                            9*****************************************99999444......22333334444455544444444444444444 PP

                    TCP 112 kesrakarara 122
                             e  ak+r r+
  GSMUA_Achr4P27220_001  83 GEDAAKKRRRK 93 
                            45555555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-19171IPR005333Transcription factor, TCP
PROSITE profilePS5136920.134139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT TVGGTLKIPT  60
EAPSSAPVTS TSAAAADDPA ANGEDAAKKR RRKLQPLRSG GGAVVAAGGA TGATSIPPGA  120
LWMVPPSAAV ATAPSSQAQI WTFPPGPQII NLASVQPVSA TGAAGSPAAP DSSDAAPAAA  180
RKPGVSVWDQ RMGHHLLSNS VPAGCPPPTF LIYIYIYIYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792KKRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397838.13e-88PREDICTED: transcription factor PCF2-like
SwissprotA2YXQ11e-37PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-37PCF2_ORYSJ; Transcription factor PCF2
TrEMBLM0SSI41e-153M0SSI4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P27220_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-29TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]