PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P06710_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 350aa    MW: 38573.6 Da    PI: 9.4911
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P06710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-114290155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s+ykGV   + +grW A+I++      ++r++lg+f  + eAa a++ a ++++g
  GSMUA_Achr4P06710_001 42 SHYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAEAACAYDVAVQRFRG 90
                           79****9888.8*********3.....5**********99************998 PP

2B3100.69.1e-32143242192
                            EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            f+k+ tpsdv+k++rlv+pk++ae+h             ++++l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD++
  GSMUA_Achr4P06710_001 143 FDKAVTPSDVGKLNRLVIPKQHAEKHfplqktgaAAAAGKGVMLNFEDAYGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLEAGDVI 230
                            89*************************887776644445999********************************************** PP

                            EEEE-SSSEE.. CS
                     B3  81 vFkldgrsefel 92 
                            +F+++ + e++l
  GSMUA_Achr4P06710_001 231 TFHRSTDPEKQL 242
                            ***887755545 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.89E-224297No hitNo description
PfamPF008471.1E-64290IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-164298IPR016177DNA-binding domain
PROSITE profilePS5103218.8874398IPR001471AP2/ERF domain
SMARTSM003803.5E-2643104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-194398IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.8E-41138250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-31140244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-29141240No hitNo description
PfamPF023628.6E-29143241IPR003340B3 DNA binding domain
SMARTSM010191.4E-24143246IPR003340B3 DNA binding domain
PROSITE profilePS5086314.353143248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRKTGPVPSP DPKSLQRVGS GASDVIDPEV GVEAESRKLP SSHYKGVVPQ PNGRWGAQIY  60
EKHQRVWLGT FNEEAEAACA YDVAVQRFRG RDAITNFKPL NDADNGDAAE LSFLDSHSKA  120
EITAPRSAPV TGLLVGAQRQ HLFDKAVTPS DVGKLNRLVI PKQHAEKHFP LQKTGAAAAA  180
GKGVMLNFED AYGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLEAGDVI TFHRSTDPEK  240
QLFIDSTARA GRGSAVAPTQ RPPVQVVRLF GFNIVRNPAA PVGGDGVDGN AASCETGKRN  300
RDHMKSISSQ RMIKRHCTEA FEENDSIRNF ISFFLYCSVL LIQSVHMDCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5014225113119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395563.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9C6M51e-108RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLM0SLN80.0M0SLN8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P06710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-109RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]