PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P21100_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 412aa    MW: 45419.2 Da    PI: 11.1338
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P21100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.81.3e-1356104155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+ykGV   + +grW A+I++      ++r++lg+fg + eA +a++ a+++++g
  GSMUA_Achr3P21100_001  56 SQYKGVVPQP-NGRWGAQIYEK-----HRRVWLGTFGDEAEASRAYDVAAQRFRG 104
                            78****9888.8*********3.....5**********99*************98 PP

2B395.92.6e-30143245197
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+kv tpsdv+k++rlv+pk++ae++      +++  +++ l +ed  gr+W+++++y+ +s+++vltkGW++Fv++++Lk+gD+v+F
  GSMUA_Achr3P21100_001 143 FDKVVTPSDVGKLNRLVIPKQHAEKYfplesgSSVASKGVLLNFEDAGGRVWRFRYSYWSSSQSFVLTKGWSRFVREKNLKAGDVVTF 230
                            89****************************997788899************************************************* PP

                            EE-SSSEE..EEEEE CS
                     B3  83 kldgrsefelvvkvf 97 
                             ++   e++l++ ++
  GSMUA_Achr3P21100_001 231 WRSTGPEKQLFIDWR 245
                            987667777777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-2256111No hitNo description
SuperFamilySSF541714.12E-1656112IPR016177DNA-binding domain
SMARTSM003801.5E-2457118IPR001471AP2/ERF domain
PfamPF008473.8E-857104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-1957112IPR001471AP2/ERF domain
PROSITE profilePS5103219.4457112IPR001471AP2/ERF domain
SuperFamilySSF1019366.54E-32140244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38141246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-29142233No hitNo description
PROSITE profilePS5086314.113143247IPR003340B3 DNA binding domain
PfamPF023623.9E-27143245IPR003340B3 DNA binding domain
SMARTSM010199.9E-24143248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEGSCVDEAP SHSARCQQTP PHAGEALQRM GSGVSAVLDP TPESGMEAVS RKLSSSQYKG  60
VVPQPNGRWG AQIYEKHRRV WLGTFGDEAE ASRAYDVAAQ RFRGRDAITN FKPLSDKRAQ  120
GGGRVVSRRT TPSYLRSARL MLFDKVVTPS DVGKLNRLVI PKQHAEKYFP LESGSSVASK  180
GVLLNFEDAG GRVWRFRYSY WSSSQSFVLT KGWSRFVREK NLKAGDVVTF WRSTGPEKQL  240
FIDWRTDVIA SFRTMTPPPT VNPLRVVKLF GVDISGLLPV NGGDRKRGRE TELFPPSQKL  300
TSMNRRGTRC PTNDEVKQGV GRRRRRRSPR RSFLVLGAEA PTPNSAITTT TTSTSRGIPA  360
GTAKGTGPPN DAMRNVDVGA GRCKNRSSSH DRHVALRFGP DAAGNNRDEE SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5014224613116DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321329RRRRRRSPR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8787811e-111FM878781.1 Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone cl36ct47cn50.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393568.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-103RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLM0SGH60.0M0SGH6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P21100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-105related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]