PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P13830_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 272aa    MW: 29806.2 Da    PI: 7.8747
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P13830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof129.11.2e-403192263
                 zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                           +e++lkcprC+stntkfCyynnyslsqPr+fCk+CrryWtkGG+lrnvPvGgg+rknkksss
  GSMUA_Achr3P13830_001 31 PEQSLKCPRCESTNTKFCYYNNYSLSQPRHFCKGCRRYWTKGGSLRNVPVGGGCRKNKKSSS 92
                           7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-333389IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-253489IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5253589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MASLPLEGTL TGCQNLQRQQ QQQERKVRPQ PEQSLKCPRC ESTNTKFCYY NNYSLSQPRH  60
FCKGCRRYWT KGGSLRNVPV GGGCRKNKKS SSKRPQHQSF TTISNPPLLA YDPSGLSLAL  120
ASLQKQHHDP GRSLDDHETF LLGNPILDDP TAPPAGFLDM MRTGFLDGTT DYSSSFHNLY  180
CGYGGNGSTD VEVGLPFGGG LGGATTTTAT TVTTTSQLSC RDLDREEDKM LVGLQWQVGG  240
DCNMALDSTR DHCSWNGTVG SNWHSLINSS LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678732.10.0PREDICTED: dof zinc finger protein DOF2.1-like isoform X3
TrEMBLM0SEF00.0M0SEF0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P13830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47043263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.15e-35Dof family protein