PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08640_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SRS
Protein Properties Length: 319aa    MW: 33562.2 Da    PI: 7.6043
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702207.73e-641112653154
                 DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 
                            +g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrer+ ++a++ +      +++ask++r   +++ +++s+t+
  GSMUA_Achr3P08640_001 111 VGESTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPASRRRERHVAAASSFA------STSASKKPRLV-ASQPATASHTS 191
                            6889*********************************************9766666543......45678888876.67777888899 PP

                 DUF702  91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            +++++++++++t+s          lP +v+++avf+cvrv+s+ddge+e+aY+++v+igG vfkG+LydqGl++
  GSMUA_Achr3P08640_001 192 TPNTTPPRSFDTTSshqdagaienLPGHVRAPAVFKCVRVTSIDDGEDEYAYHAVVKIGGRVFKGFLYDQGLDD 265
                            999999999999988999999999***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-59113264IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-26115157IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-26216263IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMVLASAASY HQQCHHESLL SSSAAAEQHP VIPLLAAASC VVEDDNPTAR ARPGGIHLWQ  60
PVLPQLPHPH APNPNPNPNP NANLANYLRK AVPTTDLSGI LLGGGAAAAG VGESTCQDCG  120
NQAKKDCSHR RCRTCCKSRG FECSTHVKST WVPASRRRER HVAAASSFAS TSASKKPRLV  180
ASQPATASHT STPNTTPPRS FDTTSSHQDA GAIENLPGHV RAPAVFKCVR VTSIDDGEDE  240
YAYHAVVKIG GRVFKGFLYD QGLDDGGHAD DANDAIPNIS ELHLGNRHGG LSSSPMLPSN  300
VFGDGSGFIG GTNYGNQTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391543.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_009391542.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK99e-70LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM0SCY10.0M0SCY1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-64Lateral root primordium (LRP) protein-related