PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P06780_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 205aa    MW: 22354.5 Da    PI: 10.9319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P06780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-133783354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           r+h+e+ErrRR+riN  +++Lr+llP a     ++l+Ka+ L ++v+ +++L
  GSMUA_Achr3P06780_001 37 RSHSEAERRRRQRINGHLATLRSLLPAA-----TRLDKAALLGEVVRQVREL 83
                           68**************************.....9*********999988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4663483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-103783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-93788No hitNo description
SuperFamilySSF474594.58E-133790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-123788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.1E-4118175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLPVETGKAV RETRMENGGG DSTTLSTRTA AEVRAIRSHS EAERRRRQRI NGHLATLRSL  60
LPAATRLDKA ALLGEVVRQV RELRGRVEEV AVVVPGEGDE VGVEEGEESG GRVVRAWVCC  120
ADRPGLMGEL SRAVRSVRAR AVRVEMVTVG GRTRSLLELE VGEAEKGDGR SALQAALWAV  180
LLTNRAGPGE NYCKRARMST RFNRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392028.11e-140PREDICTED: transcription factor AIG1-like
RefseqXP_018678988.11e-140PREDICTED: transcription factor AIG1-like
TrEMBLM0SCE51e-138M0SCE5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P06780_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-12bHLH family protein