PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P23100_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 216aa    MW: 23289.4 Da    PI: 8.0621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P23100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000151021391254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ ++++ L++l+ +      +K + a++L +A+ YIk L
  GSMUA_Achr2P23100_001 102 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFL 139
                            7788999*********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.40590139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-4100144No hitNo description
SuperFamilySSF474591.44E-10100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-8104147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDDVHALDLS ASAGLGGGVS FCQPSLAGMA LLGEDASSGL DHLQESIQGP FYLHHKMPSL  60
VSGVTEAMRC NSGWEHKSCQ AAPGNPRFQQ QQRSSCSPFK VRKEKLGDRI AALQQLVAPF  120
GKTDTASVLM EAIGYIKFLL DQVEKLSVPY MRSSGSKKRS RTTQEVLRGS CHASNEEAKR  180
DLRSRGLCLV PLACTSYMTT TTEQGVWSAA TYGGSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390169.11e-150PREDICTED: transcription factor bHLH110-like
SwissprotQ9SFZ32e-42BH110_ARATH; Transcription factor bHLH110
TrEMBLM0SAF11e-159M0SAF1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P23100_0011e-160(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]