PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22560_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 310aa    MW: 34874.7 Da    PI: 10.3762
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1256104155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+ykGV   + +grW A+I++      r  r++lg+fg + eAa+ ++ a+++++g
  GSMUA_Achr2P22560_001  56 SQYKGVVPQP-NGRWGAQIYE------RhNRVWLGTFGDEAEAARTYDVAAQRFRG 104
                            78****9888.8*******99......44**********99*************98 PP

2B391.94.7e-29131229294
                            EEE-..-HHHHTT-EE--HHH.HTT......---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            +kv tpsdv+k++rlv+pk++ae+h      +       +++ l +ed sgr+W+++++y+++s++yvltkGW+++vk++gLk+gD v
  GSMUA_Achr2P22560_001 131 DKVVTPSDVGKLNRLVIPKHHAEKHfpsksgS---SlacKGVLLNFEDASGRVWRFRYSYWNSSQSYVLTKGWSRYVKEKGLKAGDLV 215
                            6999*********************9877652...1344889********************************************** PP

                            EEEE-SSSEE..EE CS
                     B3  81 vFkldgrsefelvv 94 
                             F ++   e++l++
  GSMUA_Achr2P22560_001 216 SFWRSTGPEKQLYI 229
                            **976555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1356110IPR016177DNA-binding domain
CDDcd000181.29E-1956107No hitNo description
SMARTSM003804.3E-1757116IPR001471AP2/ERF domain
PROSITE profilePS5103218.08357112IPR001471AP2/ERF domain
PfamPF008477.2E-857104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1657109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.1E-37124234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-30129233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.155130233IPR003340B3 DNA binding domain
SMARTSM010193.5E-21130233IPR003340B3 DNA binding domain
CDDcd100171.89E-27132220No hitNo description
PfamPF023627.0E-26132227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDSSCVEEAS SDSEKRLQAP LHVMEALQRM GSGASVVLDP ILRGGTEAES RKLTSSQYKG  60
VVPQPNGRWG AQIYERHNRV WLGTFGDEAE AARTYDVAAQ RFRGRDAIVD MLRKHTKTPG  120
YSRSAREFLL DKVVTPSDVG KLNRLVIPKH HAEKHFPSKS GSSLACKGVL LNFEDASGRV  180
WRFRYSYWNS SQSYVLTKGW SRYVKEKGLK AGDLVSFWRS TGPEKQLYIN CRTGAVANNP  240
YLPSVIRLFG VNISELPASH GEGKRGKEAT EFFPPPKPLE KPFRYARALL TKSLARKSLF  300
VSIQNWYRTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5112723311116DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390239.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-101RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLM0SA970.0M0SA97_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-103related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]