PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21800_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 172aa    MW: 18935.8 Da    PI: 5.0433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19958255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +ykGVr +k +g+WvAe+r p++   r+r +lg++ t+e+Aa+a++aa  +l+g
  GSMUA_Achr2P21800_001  9 RYKGVRLRK-WGKWVAEVRFPNS---RQRLWLGSYPTPEMAARAYDAAVYCLRG 58
                           6******99.**********833...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-24866No hitNo description
Gene3DG3DSA:3.30.730.102.6E-28967IPR001471AP2/ERF domain
SMARTSM003803.0E-30972IPR001471AP2/ERF domain
PfamPF008471.5E-13958IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-20966IPR016177DNA-binding domain
PROSITE profilePS5103222.55966IPR001471AP2/ERF domain
PRINTSPR003671.8E-81021IPR001471AP2/ERF domain
PRINTSPR003671.8E-83248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKAQPTTARY KGVRLRKWGK WVAEVRFPNS RQRLWLGSYP TPEMAARAYD AAVYCLRGPG  60
AAFNFPSHPP SIPSADKLSR YEIREAAERH AREGPQREEA EEAGEQVVDP GAGSSCLGVP  120
SGQPAEPSSS VPVFDDATAS GGEWFDGFWY DAGGGNDDDD IYRSSPLWNF HQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-139661472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390429.11e-124PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM0SA211e-123M0SA21_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21800_0011e-124(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]