PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P12990_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 378aa    MW: 41222.9 Da    PI: 6.6392
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P12990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.2e-35691782102
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.ea 75 
                             g+kdrhsk++T++g+RdRR+Rls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ +             + ++ +++  +
  GSMUA_Achr2P12990_001  69 SGGKDRHSKVYTAKGLRDRRIRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAINELPPLdcfpkppdpcgdeTMNADRDVePS 156
                            689*************************************************************988666666555422222333322 PP

                    TCP  76 esssssasnsssgkaaksaakskksqk 102
                             +++++++++s+++ ++s+      ++
  GSMUA_Achr2P12990_001 157 YDQQQQQQHPSNKSGCSSSS-----DT 178
                            22233333333332222222.....22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-3570178IPR005333Transcription factor, TCP
PROSITE profilePS5136932.92571129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELEENNHAC KRSWAAGNGG QAAKIGRTEH QDEDEEDGER KGGGGADTSR WGPWQHHPSS  60
RIFRVSRASG GKDRHSKVYT AKGLRDRRIR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK  120
AAAAAINELP PLDCFPKPPD PCGDETMNAD RDVEPSYDQQ QQQQHPSNKS GCSSSSDTSK  180
GSVLDDSGYI VASHHRNLNP QTSSFTELLT GGISNADYFG QDCLFAQSQR SHPLPSGFSS  240
QSHFGNSSPM GMLSFNIAAA GDHPEMQQFS SLQDHLFPFA ATGNYNHNFS ISSGLAGFNR  300
GTLQSNSPAH LPQLHHDSHN HLQRLSSTVD GSNLQFFFGS AAAAANAENQ LPAAFDGRLQ  360
LYYGDGYRHS DLKGKGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2676130155Putative transcription factor PCF6
5zkt_B2e-2676130155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388968.10.0PREDICTED: transcription factor PCF6-like
RefseqXP_018678109.10.0PREDICTED: transcription factor PCF6-like
SwissprotQ10CE85e-66PCF6_ORYSJ; Transcription factor PCF6
TrEMBLM0S7J00.0M0S7J0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P12990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.28e-39TCP family protein