PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26300_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 239aa    MW: 27076.2 Da    PI: 5.0938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-1173115754
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  GSMUA_Achr1P26300_001  73 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 115
                            79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26966115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1670137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1272121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.39E-573120No hitNo description
PfamPF000102.3E-973115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1573128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MELDEHGFLE ELMSLRRDAW DSFPAAMGEF FSCDGSLDCF QQTPGLVPPS FTAFDAGRKK  60
KKKLEGMPSK NLMAERRRRK RLNDRLSMLR SVVPKISKMD RTSILGDTID YMKELLERIK  120
HLQEEIEVGP EQANLLSIIK ELNSDEVLVR NSPKFDVERR ENDTRIEICC AAKPGLLLST  180
VNTLEALGME IQQCVISCFN DFGMQASCSE LDMDPRTVVS AEDIKQALFR NAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15663GRKKKKKL
26080KKKLEGMPSKNLMAERRRRKR
37481ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408201.11e-122PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL12e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLM0S3871e-175M0S387_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26300_0011e-176(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]