PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21250_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 294aa    MW: 33058.5 Da    PI: 9.9613
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-1359107155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+ykGV   + +grW A+I++      r +r++lg+fg + eAa+ ++ a+++++g
  GSMUA_Achr1P21250_001  59 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFGDEAEAARVYDVAAQRFRG 107
                            78****9888.8*********......44**********99*************98 PP

2B389.62.4e-28149239185
                            EEEE-..-HHHHTT-EE--HHH.HTT......---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            f+kv tpsdv+k++rlv+pk++ae+h          +  e++ l +ed +g+ W+++++y+++s++yv+tkGW +Fvk++ Lk+gD+v
  GSMUA_Achr1P21250_001 149 FDKVVTPSDVGKLNRLVIPKQHAEKHfplkagTA--AacEGVLLNFEDATGKMWRFRYSYWNSSQSYVITKGWIRFVKEKSLKAGDTV 234
                            89************************98886522..144889********************************************** PP

                            EEEE- CS
                     B3  81 vFkld 85 
                             F ++
  GSMUA_Achr1P21250_001 235 SFWRS 239
                            **854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-859107IPR001471AP2/ERF domain
CDDcd000183.24E-2059112No hitNo description
SuperFamilySSF541711.77E-1359111IPR016177DNA-binding domain
PROSITE profilePS5103217.47760116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1660112IPR001471AP2/ERF domain
SMARTSM003802.8E-2160121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.5E-40145257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-30147255IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-28148244No hitNo description
PROSITE profilePS5086313.62149252IPR003340B3 DNA binding domain
SMARTSM010191.8E-21149252IPR003340B3 DNA binding domain
PfamPF023624.0E-25149239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEWSCIEDAM SDGEKRPEVP SPVADPIRRM GSGVSVVFDP TPEVGIEAEA ESGRRLPSSR  60
YKGVVPQPNG RWGAQIYERH QRVWLGTFGD EAEAARVYDV AAQRFRGRDA HTYHDELQQS  120
KRFHAAGHGM GFGRRRMPSY YGSVRELLFD KVVTPSDVGK LNRLVIPKQH AEKHFPLKAG  180
TAAACEGVLL NFEDATGKMW RFRYSYWNSS QSYVITKGWI RFVKEKSLKA GDTVSFWRSM  240
GPEKHLFIDR KPRPENTSCT TKPVRPAHAF RLFGVTISEL PASGGIGKTA AEKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4814625311117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409674.10.0PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ9C6M57e-96RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLM0S1T30.0M0S1T3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.13e-98RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]