PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P19000_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 593aa    MW: 63612.4 Da    PI: 7.3189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P19000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16377424455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRR+riN+++  L+el+P++    +k ++Ka++Le+A+eY+k Lq
  GSMUA_Achr1P19000_001 377 VHNLSERRRRNRINEKMRALQELIPNC----NKVVDKASMLEEAIEYLKTLQ 424
                            6*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.9E-21370434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-20371439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.612373423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-9376428No hitNo description
PfamPF000106.7E-14377424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MQCKSTRPRK SSFPSAFSQY GGLQEKDSRG SASSKVAHFS EVDRAVDDFA PSGHSGVSAR  60
GGDDDDMVPW INYPIDEVLA SETLENDYCA EFMNEFTAFD LNPVSAHRNT VAASRCASSG  120
VDVRNSGNVE NQHASKAPAG CSESARTRTG HLFQLPQQCQ SSVPNSKSTQ QQPNSTASLM  180
NFSHFARPAA LAKVSLQNVG GLRSTEKVNS VSRSNPITSA PIASTNGVKD ISRASKLSAL  240
DSHKLDLGPV MKALREGGLV AQPDAICLDI ASKNNNKTDE CTKLPDNVPS SSLAASMALC  300
RNDTRKDPDA VVASSSICSR NLTGAASNEP RHMEKRKEYE GDESDYHSDD LQDESVGTRR  360
PANGRVARTK RSRAAEVHNL SERRRRNRIN EKMRALQELI PNCNKVVDKA SMLEEAIEYL  420
KTLQLQVQIM SMGNGLYMPP MMFPLAMPHI RAPTMAPFPP VGVGMGAGIG VAPGCPMIRI  480
PPVHAPQFPC TPNSGQLNLR GIPGPVSPQM YGIQGHGIPV VIPGPPPFGT LPGFSMNSVA  540
DQVPGTMAVV AHPDPATAGT GDQQQRNSNV EPRTSTEEEP QIQASTEATK ECF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412387.10.0PREDICTED: transcription factor PIF3-like isoform X2
RefseqXP_018683049.10.0PREDICTED: transcription factor PIF3-like isoform X2
TrEMBLM0S1580.0M0S158_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P19000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-44phytochrome interacting factor 3