PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P05400_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 298aa    MW: 33644.9 Da    PI: 10.1512
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P05400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-115697148
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                           s+ykGV   + +grW A+I+d      ++r++lg+f  ++eAa+a++ 
  GSMUA_Achr1P05400_001 56 SRYKGVVPQP-NGRWGAQIYDK-----HQRVWLGTFNEEDEAARAYDI 97
                           78****9888.8*********3.....5**********99******96 PP

2B397.96.6e-31144241192
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+ tpsdv+k++rlv+pk++ae+h      g    + + l +ed  g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v+F
  GSMUA_Achr1P05400_001 144 FDKAVTPSDVGKLNRLVIPKQHAEKHfpqpqtGAAACKAVLLNFEDACGKVWRFRYSYWNSSQSYVLTKGWRRFVKEEGLRAGDVVTF 231
                            89************************987776444458899*********************************************** PP

                            EE-SSSEE.. CS
                     B3  83 kldgrsefel 92 
                            +++   e++l
  GSMUA_Achr1P05400_001 232 HRSTGPERQL 241
                            *765555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-75696IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-115698IPR016177DNA-binding domain
CDDcd000185.35E-165696No hitNo description
SMARTSM003805.7E-1057103IPR001471AP2/ERF domain
PROSITE profilePS5103215.0665797IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-145797IPR001471AP2/ERF domain
PRINTSPR003678.3E-55869IPR001471AP2/ERF domain
PRINTSPR003678.3E-57894IPR001471AP2/ERF domain
SuperFamilySSF1019362.49E-30140248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-39140249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-28142255No hitNo description
PfamPF023621.9E-27144239IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649144247IPR003340B3 DNA binding domain
SMARTSM010191.3E-22144248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
METSSVEDES SEVERRSSPP RPPTLPATEG LQRLGSGASV VLDPEVGAES RKLPSSRYKG  60
VVPQPNGRWG AQIYDKHQRV WLGTFNEEDE AARAYDIVDM LRKHIYHDEM RQSRQSSGAE  120
GRRTYPSRGG SMGWFGGPHR EHLFDKAVTP SDVGKLNRLV IPKQHAEKHF PQPQTGAAAC  180
KAVLLNFEDA CGKVWRFRYS YWNSSQSYVL TKGWRRFVKE EGLRAGDVVT FHRSTGPERQ  240
LFIGRKTRPA VEVVRLFGVN IADVSGVVRR NAKRTCRDME STVSSSCELL KRRCREGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5314125311122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381393.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9ZWM91e-105RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLM0RX980.0M0RX98_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P05400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-106related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]