PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03650_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 570aa    MW: 60948.2 Da    PI: 8.3967
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.64.1e-991945702374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++ Ll+ A+a+ +g+l++a+a La ++  a+p+gd+ qRl+a++   L +rl++ +++ ++a++  +     s e++aa+++++++sP
  GSMUA_Achr1P03650_001 194 RQMLLDTATAIGEGNLHAATANLAVIKAAANPRGDAEQRLTAMMYATLFSRLNNLQTGSSHAVAELR-----SPEHFAATQMLYDLSP 276
                            689***************************************************5555554444333.....679************* PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelg 173
                            ++k+++++aN+aIlea++ e  +Hi+Df++++G Q++a+l+aL++R +  p++R+T+v++p+s     ++  l+ +ger++k+Ae++g
  GSMUA_Achr1P03650_001 277 CFKLAFIAANHAILEATKDEPNIHILDFEVGHGSQYAAFLHALTQRLRHRPTIRVTAVVDPSSPftniNSGGLRVVGERIEKLAERVG 364
                            ************************************************************998889999******************* PP

                   GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                            v ++f+v v++r e+l+  +L ++pgE+l+Vnl++ l r+ desvsl+++rde+L+ v+ l+P++v+++eqe++++++ F +rf+ea+
  GSMUA_Achr1P03650_001 365 VGLRFSV-VSRRPEELDAVALGCEPGEVLIVNLAFVLSRVADESVSLANPRDEILRRVRALQPRLVTLAEQEINTSTAAFPARFAEAC 451
                            ******9.7******************************************************************************* PP

                   GRAS 262 eyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             +y al++slea+++++      er+  E+  l+r++vn+va eg+er+er+e l+kWr+r+++aG+kpvpl+ + ++ +k+ l+  +
  GSMUA_Achr1P03650_001 452 VHYGALLESLEATAAAAVqkgfAERARAEAG-LARRAVNAVAREGQERVERCEVLGKWRARMGMAGLKPVPLGPSSVEPVKYRLESAG 538
                            **********999666555677899999999.999***************************************************** PP

                   GRAS 346 .sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                             + g++++ee g +   +gW++r L+++SaWr
  GSMUA_Achr1P03650_001 539 sNPGFTIKEEVGGVAlgFGWRGRVLTVLSAWR 570
                            99******99877764689************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.784167547IPR005202Transcription factor GRAS
PfamPF035141.4E-96194570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MASGFPGREL GLGAGGRGGT LLKRTLADME IQHQQQQMQL QLQHQHQHQQ SLFLRSVKQR  60
TLAAPSIATL SPAVVGAFPC NSFSAATQSS VSTSSTVTSA GFAFPRRPEL LAGSVPEVRS  120
SGSLRDQLKE LERRLLLDDE EEEASASGSA VTHAAWSEAI QSLISSSSTI SSSASCSPPS  180
SMPSPPPPPT GTSRQMLLDT ATAIGEGNLH AATANLAVIK AAANPRGDAE QRLTAMMYAT  240
LFSRLNNLQT GSSHAVAELR SPEHFAATQM LYDLSPCFKL AFIAANHAIL EATKDEPNIH  300
ILDFEVGHGS QYAAFLHALT QRLRHRPTIR VTAVVDPSSP FTNINSGGLR VVGERIEKLA  360
ERVGVGLRFS VVSRRPEELD AVALGCEPGE VLIVNLAFVL SRVADESVSL ANPRDEILRR  420
VRALQPRLVT LAEQEINTST AAFPARFAEA CVHYGALLES LEATAAAAVQ KGFAERARAE  480
AGLARRAVNA VAREGQERVE RCEVLGKWRA RMGMAGLKPV PLGPSSVEPV KYRLESAGSN  540
PGFTIKEEVG GVALGFGWRG RVLTVLSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3921257022375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389832.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM0RWS30.0M0RWS3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.12e-88SCARECROW-like 8