PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P18680_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 231aa    MW: 25635.9 Da    PI: 8.8817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P18680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-061231601254
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  GSMUA_Achr11P18680_001 123 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 160
                             67788899********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.481111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-7121165No hitNo description
SuperFamilySSF474591.31E-12121179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-10121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-4122166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MHDHRHHHVL SSNASCELPS STLLPGLLEP DSRLQRSFHD HREQLQRSAS ARSPQFSNET  60
CFWNPSAGDG SNLIVKVSVE AITSSSTIIR SSSSTMEKRN GSEPALKKAR TETPSPLPTF  120
KVRKEKLGDR ITALQQLVSP FGKTDTASVL QEAIEYIKFL HDQVRVLSAP YLKNGHQMQQ  180
VKSLDSSKDS GEQNQDLRSR GLCLVPMSST FAVANEIPAD LWTPPFIGTF R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384213.11e-159PREDICTED: transcription factor bHLH103-like isoform X1
SwissprotQ94JL31e-51BH112_ARATH; Transcription factor bHLH112
TrEMBLM0RTE81e-170M0RTE8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P18680_0011e-171(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]