PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17370_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 226aa    MW: 22966.1 Da    PI: 9.5258
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP74.92.3e-2318424113
                     TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasalnl 110
                             ++a caar+F+L++eLG+++d++ti+WLl+ a+pai ++tgt++ +a ++      + +++ +++ +a+++a+  +++++aa+   +
  GSMUA_Achr11P17370_001   1 MPAACAARIFQLTRELGHKSDGETIQWLLERAEPAILAATGTGTVPAIAT------NVGGTLKIPTEAPTSAPVTSTSAPAAADDPV 81 
                             9*****************************************88888444......2222223332222222222222222222222 PP

                     TCP 111 ake 113
                             a +
  GSMUA_Achr11P17370_001  82 APD 84 
                             221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-17159IPR005333Transcription factor, TCP
PROSITE profilePS5136919.793139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPAACAARIF QLTRELGHKS DGETIQWLLE RAEPAILAAT GTGTVPAIAT NVGGTLKIPT  60
EAPTSAPVTS TSAPAAADDP VAPDDEEAGK KRRKKLQPSR TGRVQGVVPM WALGGSAAGA  120
SVIPPGALWV LPQPSTAVAG TSSQSHVWTF PQTPQIIQLA SARPISAGGL FSGVNVATGP  180
EGEPSAASPP AAGRKHEPRL MSAPVASRRG QLSRSSASMV PSDCCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KKRRK
28994KKRRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384074.11e-126PREDICTED: transcription factor PCF2-like
SwissprotA2YXQ18e-36PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH68e-36PCF2_ORYSJ; Transcription factor PCF2
TrEMBLM0RT171e-157M0RT17_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17370_0011e-158(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-29TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]