PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P31090_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 269aa    MW: 30738.5 Da    PI: 7.2946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P31090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1992141255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g
  GSMUA_Achr10P31090_001  92 RYRGIRRRP-WGKWAAEIRDPCK---GVRVWLGTFNTAEEAARAYDAEARKIRG 141
                             7********.**********854...3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.74E-3392151No hitNo description
Gene3DG3DSA:3.30.730.101.5E-3192150IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2292150IPR016177DNA-binding domain
SMARTSM003804.0E-3492155IPR001471AP2/ERF domain
PROSITE profilePS5103224.23692149IPR001471AP2/ERF domain
PfamPF008474.6E-1292141IPR001471AP2/ERF domain
PRINTSPR003678.5E-1293104IPR001471AP2/ERF domain
PRINTSPR003678.5E-12115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MCGGAIISNI IPAGPRSRRR TAGYQRPDPK NEFGKKDDDF EADFMQFEED EEADLFHFKP  60
FAFDSRDKPV PLRPSVIDKP SSKSATKNRK NRYRGIRRRP WGKWAAEIRD PCKGVRVWLG  120
TFNTAEEAAR AYDAEARKIR GKKAKVNFPD AAFPRVRTLL TKLTAPETPR TEMPRTDKCF  180
NYLNDPFQDF CSSFDFTEVE PIIQSEELTY LENGGTKKQL NNIFFQQPYS DGSTDDLINN  240
LLSGDFTQDM SNVDLWSFDG MAHMGGSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20911491372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381608.11e-148PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLM0RMY30.0M0RMY3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P31090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-25related to AP2 12