PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P27510_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 200aa    MW: 21543.6 Da    PI: 11.6699
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P27510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-195992134
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                            Cs C+ttkTplWR+gp+g+k+LCnaCG+++ k +
  GSMUA_Achr10P27510_001 59 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQSKAR 92
                            *****************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-1853104IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-135494No hitNo description
PROSITE profilePS5011412.2425786IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-165792IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.45E-115890No hitNo description
PfamPF003202.5E-165992IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405984IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSSKMRFMRK MMNSSHIVVS KQPRGSMRIT PDDQSRSHRL GYSGSNRSNN SPSGIIRVCS  60
DCNTTKTPLW RSGPRGPKSL CNACGIRQSK ARRAMAAAAP NGGLIIPATS PAKAPRQEKI  120
DIDRTLPFKK RCKIDTASSS SSSSSSSTTT TTTASSSRKH CFGNVTSSSN KSSAIQRVFP  180
QEERDAAILL MGLSCGLIRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381174.11e-142PREDICTED: GATA transcription factor 21-like isoform X2
RefseqXP_018674954.11e-142PREDICTED: GATA transcription factor 21-like isoform X2
TrEMBLM0RLX51e-142M0RLX5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27510_0011e-142(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-25cytokinin-responsive gata factor 1