PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P19690_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 292aa    MW: 32687.8 Da    PI: 7.963
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P19690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.5e-105399153
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                            s ykGV   + +gr+ ++I++      r +r++lg+fg + eAa+a++ a++ +
  GSMUA_Achr10P19690_001 53 SWYKGVVPQP-NGRYGSQIYE------RhQRVWLGNFGDEAEAARAYDVAAQWF 99
                            679***9788.8*******99......44**********99*********9755 PP

2B360.62.7e-191562282393
                             .HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                      B3  23 aeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                             a+e+  +++ ++++ l +ed  g+ W+++++y+++s++yv tkGW++Fvk++ Lk+gD v F ++   e++l+
  GSMUA_Achr10P19690_001 156 AREIfgSSVARNGVLLNFEDAAGKMWRFRYSYWNSSRSYVVTKGWSRFVKEKSLKAGDLVSFWRSTGPEKQLC 228
                             455566566778899***********************************************97655555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-1453109IPR016177DNA-binding domain
PfamPF008476.2E-55399IPR001471AP2/ERF domain
PROSITE profilePS5103216.73954109IPR001471AP2/ERF domain
SMARTSM003803.9E-2154115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1655109IPR001471AP2/ERF domain
CDDcd000181.97E-1855108No hitNo description
SMARTSM010191.5E-5136235IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-24155234IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-16163228IPR003340B3 DNA binding domain
SuperFamilySSF1019362.62E-18164232IPR015300DNA-binding pseudobarrel domain
CDDcd100179.82E-15166220No hitNo description
PROSITE profilePS5086310.828171235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEGGCVEEAS SDWVNRLHVS KVLQRIGSGV SVVLDPSAEG GGIEAESRKL SSSWYKGVVP  60
QPNGRYGSQI YERHQRVWLG NFGDEAEAAR AYDVAAQWFR GCDAVTNFKP LTESNDEEAA  120
ELSFLVAHSE AEIVDMLRKH TYHDELQQSK QTLRSAREIF GSSVARNGVL LNFEDAAGKM  180
WRFRYSYWNS SRSYVVTKGW SRFVKEKSLK AGDLVSFWRS TGPEKQLCID WKTSPVACNR  240
AVPPSIRPLP VVKLFGVDIS GVPASGDDGK RGREMELFPP PQFFKKQFVE AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-3016223345116DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381733.20.0PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0693400-like
SwissprotP822805e-84RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLM0RJP40.0M0RJP4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P19690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-78related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]