PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P17450_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 194aa    MW: 20982.1 Da    PI: 4.4068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P17450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-192070155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ykGVr++k +g+WvAe r p++   r r +lg+f t+e+Aa+a++aa  +l+g
  GSMUA_Achr10P17450_001 20 PKYKGVRRRK-WGKWVAEARYPNS---RERLWLGSFATPEMAARAYDAAVYCLRG 70
                            79*****998.*******888732...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-142070IPR001471AP2/ERF domain
CDDcd000187.01E-272080No hitNo description
PROSITE profilePS5103222.6032178IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-212179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-282179IPR001471AP2/ERF domain
SMARTSM003804.2E-302184IPR001471AP2/ERF domain
PRINTSPR003674.1E-92233IPR001471AP2/ERF domain
PRINTSPR003674.1E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTCVLRLGME KPSSSKGVAP KYKGVRRRKW GKWVAEARYP NSRERLWLGS FATPEMAARA  60
YDAAVYCLRG PGEALNFPDQ PPNIPSADKL SKYEIRAAAV RHAHEGAKRP QEGEARQGGG  120
EEAVDPGESS SGLGMSGEPV EESLPDLFDS GMVGGVWPLE DNDFWIGGDG GGGHDDDDDD  180
DDDGGNECVP LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1521801474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381715.11e-133PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-35ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM0RJ201e-138M0RJ20_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P17450_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]