PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P17370_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 261aa    MW: 27592.7 Da    PI: 4.6832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P17370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1857106356
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ l+g+
  GSMUA_Achr10P17370_001  57 YLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTLRGA 106
                             88******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-2856113IPR001471AP2/ERF domain
CDDcd000184.66E-2856114No hitNo description
SMARTSM003804.5E-3256119IPR001471AP2/ERF domain
PROSITE profilePS5103221.52256113IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2157113IPR016177DNA-binding domain
PRINTSPR003671.4E-85768IPR001471AP2/ERF domain
PfamPF008472.7E-1057105IPR001471AP2/ERF domain
PRINTSPR003671.4E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGFSFFFSSS SSSASPGSDV TQEKKSKRRT QQDSSSSSES NGNGANSASA GGGGMRYLGV  60
RRRPWGRYAA EIRDPATKER HWLGTFDTAE EAAVAYDRAA RTLRGARART NFAYPDLPPG  120
SSLTPFLSPD LQPPPSSFTL SAPSPIQDSG HHAAAAFPAL GGQGDYNAIA DSTISDDGTH  180
YYYHNQQQQE DGGASAAGEE DMAAMWCDPG EFGGYGSPAS HGIFFEEGYV HSPLFGPMPT  240
VDDAAADGFQ LGGSSSSSYY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1854112362ATERF1
3gcc_A2e-1854112362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058452e-74AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06.
GenBankAP0149582e-74AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-74CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381713.11e-164PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLM0RJ120.0M0RJ12_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P17370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-23ERF family protein