PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P05890_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 285aa    MW: 30378.7 Da    PI: 7.2599
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P05890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.4e-392786261
                  zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                            +e+alkcprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s
  GSMUA_Achr10P05890_001 27 PEQALKCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKNKRS 86
                            6899******************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-252580IPR003851Zinc finger, Dof-type
PfamPF027011.5E-332985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2553185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MASHQLEGLL SCPKNQQQQE RKPRPHPEQA LKCPRCASTN TKFCYYNNYS LSQPRYFCKG  60
CRRYWTQGGS LRNVPVGGGC RKNKRSFSSS SSRKAQDQDL ITATNSFNPL PSPTFIPPLS  120
SDLTLAFAGL HKQPPNHGHS LLLGHPNNES LPAVTTNHGF LDILRSDSID SINPSGLDNY  180
LYYGFGVSGN VEVGGGANGE DDGFLSFHGG LGGATATAAA SQGSCKDMDE GETKVLMGGD  240
GNLAVDSGRE WTAMGSSWHG LINSSLMSGA GIDVSSTLGD AHAFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420350.10.0PREDICTED: dof zinc finger protein DOF5.3-like isoform X1
TrEMBLM0RFR60.0M0RFR6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P05890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47043263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.19e-34TARGET OF MONOPTEROS 6