PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04860_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 461aa    MW: 50466.1 Da    PI: 6.9113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.6e-053353721254
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ +++  L++l+ +      +K + a++L +++eYIk L
  GSMUA_Achr10P04860_001 335 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 372
                             677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.011323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-8333390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-5333377No hitNo description
SuperFamilySSF474593.14E-11333388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MADQFQAGSC SSGTWWSSGF GGGPTMSASA SCSTELTNVA GSFNWATASD MFEPKSRSCD  60
ESPVSISNSS VTFQDIQNSD VSAPVIAAPM LDSVSQAMDF GLSSPTVEWS QSFFSGRGQN  120
SFHALLQEDV ISRPYAQRDW GVESNQTHIP LKNLNHCSLQ DHHVLLSSRI NSIPLLSASH  180
GLPSTLLQGH LEPESRLQGS FNDARTMKYE SSVDCREASN DSLQTSVGRL PQFMNASPPK  240
QQLQFSNDTP FWNPSASSVN EAHSNFHHAK PPQPFHNENS SHSKPVVKVS EELFLPSSAG  300
ARGSCPTLEK RSDSEPAAKK PRTETPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  360
VLHETIEYIK FLHDQVRVLS APYLKKDHQT QQTKASDKPK DCEGRNLNLR SRGLCLIPIS  420
STFAVANEIP TDCWTPTFTG TFSKEEGKKT GGDPTKTVFW R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674568.10.0PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBLM0RFG30.0M0RFG3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P04860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-51bHLH family protein