PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 1571aa    MW: 177224 Da    PI: 8.0852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043332genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003614541479123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                   ++C    C++ Fs+k +L++H r+ +
  Lus10043332 1454 FQCDidGCTMGFSSKQELNVHKRNiC 1479
                   89********************9877 PP

2zf-C2H214.20.0001314791501323
                   ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                   Cp   Cgk+F ++ +L++H r+H
  Lus10043332 1479 CPvkGCGKVFFSHKYLVQHRRVH 1501
                   9999*****************99 PP

3zf-C2H211.70.0008115371563123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   y+C    Cg++F+  s++ rH r+  H
  Lus10043332 1537 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1563
                   89********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.9E-162364IPR003349JmjN domain
PROSITE profilePS5118314.4372465IPR003349JmjN domain
PfamPF023751.7E-142558IPR003349JmjN domain
SuperFamilySSF511976.59E-12117177No hitNo description
SMARTSM005581.3E-16193385IPR003347JmjC domain
PROSITE profilePS5118418.933193385IPR003347JmjC domain
SuperFamilySSF511976.59E-12211280No hitNo description
PfamPF023734.1E-15226277IPR003347JmjC domain
SMARTSM003558.814541476IPR015880Zinc finger, C2H2-like
SMARTSM003550.002514771501IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.50814771506IPR007087Zinc finger, C2H2
PROSITE patternPS00028014791501IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-514791505IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-914931535No hitNo description
Gene3DG3DSA:3.30.160.602.5E-815061531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.82415071536IPR007087Zinc finger, C2H2
SMARTSM003550.003615071531IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015091531IPR007087Zinc finger, C2H2
SuperFamilySSF576675.77E-815251559No hitNo description
Gene3DG3DSA:3.30.160.602.7E-915321560IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0315371568IPR007087Zinc finger, C2H2
SMARTSM003550.8515371563IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015391563IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1571 aa     Download sequence    Send to blast
MAASGGLAAE REDVLQWLRN LPVAPEYHPT LAEFQDPIAY IFKIEKEASK YGICKIVPPV  60
LQSPKKTAIA NLNRSLAARV VGGASSSSSP PTFTTRQQQI GFCPRKPRPV QKPVWQSGEN  120
YTFQEFESKA KSFEKSYFKK YAKKGTTLSP LEIETLYWKA TVDKPFSVEY ANDMPGSAFS  180
VKKNSGIVVE GMSVGETEWN MRGVARAKGS LLRHMKEEIP GVTSPMLYIA MMFSWFAWHV  240
EDHDLHSLNY MHMGAGKTWY GVPKEAAVAF EEVVRVHGYG GEINPLRECF FQQNSCLSVD  300
HLRRLRLILV HHMLKLVSVM SGLISLFCTS CQLHLPFWVR RPQLCPRKYS LGQVFHAAGF  360
NCGEASNIAT PEWLRFAKEA AVRRASINYP PMVSHFQLLY DLASELCSRF TTNASAKPRS  420
SRLKDKQKGE SEMVTKEILV ENVMNNNNLL HNLGKGASVV LLPWSSSDIS LCSNYRFGSQ  480
FVKPSFGFRA HKGFMGQSKV SSYDDSKPDK IDVINQVKGM YPLKAKFGSS YEGKTCPVLG  540
KSGNLHNPHP ETERMAMLDN KSPDQRLFSC VTCGILNYDC VAIIQPREAA ARYFMSADCS  600
FFNDWTVVSG AGKEAFIAAD EDAGGAEDSI AHGPHDILES ENNHKQIIDL SSGAVSDTKL  660
KLETSALGLL ALNYGDSSDM DEEPGLSPDN NNTYDRMNSL SEGNNQSQDS ASPSFEEELP  720
DGTSRHKFDC GNRVFLQGVE NNVQQLENTD PLLAPTCDED SSRMHVFCLE HAVEVEQRLR  780
QIGGVHVFLL CHPDYPGVEE QAKLVSEELR VDYLWKQTNF KDASLDDEQR IQSVLDSEEA  840
IPGNSDWAVK LGINLFYSAN LSWSPLYSKQ MAYNSVIYNA FGRTSPGNSP KKSNNVSGRR  900
NGRQRKAVVG KWCGKVWMSN QVHPFLTNWD SQYQDQEQEP EKLDVQQPQV FETETLRKSV  960
KSVKKRKPKA KSASVREVAL AETEEIHKPL GRLNNRKRTN SVEEHESLHR SKLARSAVSE  1020
YVDSDDSLGD ESLQQQHKKA VSQQTREFVC EPADFYDTVH KTSQKQRRTP RVCQAKYVQK  1080
ESASDDSLEE NMLQWHGRVP RSKQQMKLMD REEVSGLPLE ESSQKSHKVY KRRKGKYAEK  1140
EYAAPSESTE NVFHRQNSSN PEGNQFEEAE FDDSLEESVK WQTASFSRED LMSDDSVYND  1200
DAHQQRGTVG GKNPSSYSAE DAVSDDPLDT DTQQLERTIP RIERSRSFGD EDAVSDDPLQ  1260
EDDMEQNFSS IHQNKRTKFA ERQEDITDEL RNSSTRRYPR KTPRGKHGRF IKGEIEDADS  1320
DHLVGEDFNE QQGRTLGSKQ KKHTRGRTPP SGKKPMQKET PLRPVKLETP RMRNKGVQKN  1380
AYQFDDVPVD DDEEEGGPSS RLRRRPSKPT KVSITKSKEI QQQQSSRIKV KSAPAGKAPA  1440
GRKGGKNKVE DGLFQCDIDG CTMGFSSKQE LNVHKRNICP VKGCGKVFFS HKYLVQHRRV  1500
HVDDRPLKCP WKGCKMAFKW AWARTEHIRV HTGARPYVCA EEGCGQTFRF VSDFSRHKRK  1560
TGHSGRKDSE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-641454157023139Lysine-specific demethylase REF6
6a58_A2e-641454157023139Lysine-specific demethylase REF6
6a59_A2e-641454157023139Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1960966KSVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442279.10.0lysine-specific demethylase REF6
TrEMBLA0A2K1XK920.0A0A2K1XK92_POPTR; Uncharacterized protein
STRINGLus100433320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6