PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043304
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 488aa    MW: 53677.3 Da    PI: 9.5275
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043304genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.4e-32256311156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Lus10043304 256 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 311
                  68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-28253314IPR009057Homeodomain-like
PROSITE profilePS5129413.322253313IPR017930Myb domain
SuperFamilySSF466896.27E-17254314IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26256311IPR006447Myb domain, plants
PfamPF002498.7E-7258309IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASPSELSLD CKPHSHSLLL KSFSDQIVAN NAPPQDDQKH KLEEFLSRLE EERFKIDAFK  60
RELPLCMQLL TNAMESSRQQ LEAYRGSRQP AAVVLEEFIP MKNTVAPPPS SSDQIVMSME  120
NKANWMTTAQ LWSQDTKPAL HHEKDETFRQ DNNNSTMGFS VITERRNSCN GSTGAFLPFS  180
KERNNNDSNC TLALAASTDT SNKLDHREEE EEKIKCSDQP VNIINGFSSE SDGGGINVTA  240
AEAAAAAGGS NNSQRKARRC WSPDLHRRFV NALQMLGGSQ VATPKQIREL MKVDGLTNDE  300
VKSHLQKYRL HTRRPSPSPQ ASGGPPPQLV VLGGIWVPPE YAASHGGAHA FYGAATAHPP  360
PPSHFYSVPP PQDYYTAAGL PMQALPPPHT PPTLFLLLIL RQRPTTTSTT TTRSSSTRLL  420
RRRRPTAPDR IRTTGQPGTG RRALKMGSRR AGAGKQGRAE TMLAAMEERE KIERNAIGER  480
SPSNFNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13256309255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043304
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308314.11e-132myb family transcription factor EFM
SwissprotQ9ZQ851e-112EFM_ARATH; Myb family transcription factor EFM
TrEMBLB9H9931e-130B9H993_POPTR; Uncharacterized protein
STRINGLus100433040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-85G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]