PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043199
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 541aa    MW: 58539.4 Da    PI: 5.6228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043199genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-11351393754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  A+eY+k+L
  Lus10043199 351 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIEYLKEL 393
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16347415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8350393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-14350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-13351397No hitNo description
Gene3DG3DSA:4.10.280.108.0E-16351407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.66E-6469529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MMDDNINNKN KDDAAASGGL NNGDKLNHNI ILQNMGYKSM LQQEEEEGGE ESEWYVPNKE  60
MNFATSNLVA DPDGLLLHHT VDHSSSSCSP SASSVFNNLV ADPNSQVHYF MQQPKPTSSS  120
SFLNAMNPLD PGFDFGFLDN QLATNYSTLL NKPNGGMMFG ADNCGGSGHQ IGAHNFCSPN  180
PQFQSNNNSM LQVLPETGGG EFRGFEEGNA NGNNGLLFMN RSNKLLRPLE SYPSVGEQPT  240
LFQKRAALRK NLGNNNGKKE MVEMEEFSEK KRVLLSHGGG CGGGDSFLDD LSIDGSGLNY  300
DSDELGDDTT KLDEICKAGG FSSSNANSAS TGVTDQKGGG KKKGLPAKNL MAERRRRKKL  360
NDRLYMLRSV VPRISKMDRA SILGDAIEYL KELLQRINDL HNELESTPPG SSSLTPTAGA  420
TSFHPLTPTP SALSSHIKDK LCPSPLPSPN GSQPARVEVR VREGRAVNIH MFCGRRPGLL  480
LSTMTALDNL GLDIQQAVIS CFNGFAMDIF RAEQCKEGQE VQPEQIKAVL LDSAGYHGLI  540
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340358KKKGLPAKNLMAERRRRKK
2352359ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374570.10.0hypothetical protein POPTR_0015s11650g
SwissprotQ9LSE21e-129ICE1_ARATH; Transcription factor ICE1
TrEMBLU5FSQ70.0U5FSQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-96bHLH family protein