PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042538
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 312aa    MW: 34452.4 Da    PI: 9.7176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042538genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.5e-31241298359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p ++++tYeg+Hnh+
  Lus10042538 241 DEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERCVEEPAMLIVTYEGDHNHS 298
                  9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.4E-15190237IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-33227298IPR003657WRKY domain
PROSITE profilePS5081129.31234300IPR003657WRKY domain
SuperFamilySSF1182902.48E-26237298IPR003657WRKY domain
SMARTSM007741.6E-36239299IPR003657WRKY domain
PfamPF031063.9E-26241297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEGVEEASKE AVESCYRVLG LICHPIEDQS VQATNLVAET GDAVLKFKRV VSLLSNTGLV  60
GRGRFRKQQN KFLKSSSLPH TIFLDYDDGS ISAPTVTAEI LAPRPLQIVP PPNNTRFVPT  120
RFPDPRMMMF QQQNQQKVKY DHQAEMMMKF DHGGSESTTT RSFISSLSMD GGGSDSFHLI  180
GIPQSSSYHR RRCSSGSVKC GASAADASCG KCHCSKKRKL RVKRSIKVPA ISNKVADIPP  240
DEYSWRKYGQ KPIKGSPYPR GYYKCSSLRG CPARKHVERC VEEPAMLIVT YEGDHNHSRL  300
LSSSSSMSAL T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20232297771WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068GRGRFRKQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894273.11e-103probable WRKY transcription factor 74
SwissprotQ93WU61e-100WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A140H8P91e-100A0A140H8P9_MANES; WRKY transcription factor 45
STRINGLus100425380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-91WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]