PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042531
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 383aa    MW: 43277.4 Da    PI: 9.2073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042531genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-52121451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdeel+ +yL+kk++++++++ ++i++v+iyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++   
  Lus10042531  12 LPPGFRFHPTDEELILHYLHKKLSSSPFPV-SIIADVNIYKFDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAARSGYWKATGTDKVISVAlpg 108
                  79****************************.89***************988899**************************************999998 PP

          NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ ++g+kk Lvfykgr pkg kt+W+mheyrl
  Lus10042531 109 hasqDNIVIGVKKALVFYKGRPPKGIKTNWIMHEYRL 145
                  87766667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-633181IPR003441NAC domain
PROSITE profilePS5100560.50312181IPR003441NAC domain
PfamPF023653.0E-2713145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVMMQQSPQS SLPPGFRFHP TDEELILHYL HKKLSSSPFP VSIIADVNIY KFDPWDLPAK  60
ATFGEKEWYF FSPRDRKYPN GARPNRAARS GYWKATGTDK VISVALPGHA SQDNIVIGVK  120
KALVFYKGRP PKGIKTNWIM HEYRLSDSPS YIANPNNKPI RPKDFSSMRL DDWVLCRIYK  180
KSHPNSSHQH HHPQSVTTAA SVASTTSDPH QEDDEDHRQR YLVSQPSSKS PTITNQTALW  240
PQKSSFFSNS FDATDYSLLS NFLSDPQFII NPPPPLIEVT DSIVTTTTTT MNQQESNNLG  300
YLHHKVLPDH QSTGMMTSTR PKRDRSNGDQ DVSMGTYSKK PMTSNFINAS GSYDYDDQYG  360
GFVNQAVLNH NLLMSHHLQF QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-70918114165NO APICAL MERISTEM PROTEIN
1ut4_B5e-70918114165NO APICAL MERISTEM PROTEIN
1ut7_A5e-70918114165NO APICAL MERISTEM PROTEIN
1ut7_B5e-70918114165NO APICAL MERISTEM PROTEIN
3swm_A6e-70918117168NAC domain-containing protein 19
3swm_B6e-70918117168NAC domain-containing protein 19
3swm_C6e-70918117168NAC domain-containing protein 19
3swm_D6e-70918117168NAC domain-containing protein 19
3swp_A6e-70918117168NAC domain-containing protein 19
3swp_B6e-70918117168NAC domain-containing protein 19
3swp_C6e-70918117168NAC domain-containing protein 19
3swp_D6e-70918117168NAC domain-containing protein 19
4dul_A5e-70918114165NAC domain-containing protein 19
4dul_B5e-70918114165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042531
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628145.11e-119PREDICTED: NAC transcription factor 29-like
SwissprotQ84TD61e-100NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0B0NJB61e-118A0A0B0NJB6_GOSAR; NAC domain-containing 29-like protein
STRINGLus100425310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-96NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]