PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 289aa    MW: 30327.5 Da    PI: 5.8951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041659genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029159179323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  Cp C k+F+++     H+r+H
  Lus10041659 159 CPTCRKMFRSWKAVFGHLRMH 179
                  *******************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSNSNSSSED NTNSAPSSPP HLSLATTATD AAATSSPNLH ISGEQQQVAQ VSQAAQLTAT  60
VPPPPPLPRA SSSRGGVGIS TISVLAAGGA IRWRPSSSSS ASTAPIPNPL LMVPSTITTA  120
TELLEQAFKH PPPPLPPPQE PNCNRQKGEM DVPSGPPCCP TCRKMFRSWK AVFGHLRMHK  180
ERTYRGAFPP PVSSDGSSSS STVAITSTNT TIRRRGLAID LNVEFNPEDH QEADENIVHV  240
EQEAQALTPP PPAPLRESAS IDLNEPAANK SDEKEGENGS SNNDKAKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100416590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-14C2H2 family protein