PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 223aa    MW: 24362.9 Da    PI: 11.2999
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041328genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP80.93.4e-25371374104
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg....kaaksaa 95 
                   k+++ ++h kv+gR+ RvRl+a+caar+F+L++eLG+ +d++t+eWLl+   ++     +tss+s   +++   ssss ++         +a ++  
  Lus10041328  37 NKSSNRDRHRKVDGRGTRVRLPALCAARIFQLTRELGHRTDGQTVEWLLNHVPHSHFPSDQTSSPSLvaNSV--LSSSSRTE----MrprkRAIPEPD 128
                  68999***********************************************99998888884444322222..12222222....112222222222 PP

          TCP  96 kskksqksa 104
                  ++++s+++a
  Lus10041328 129 SGSSSSSPA 137
                  222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-194087IPR005333Transcription factor, TCP
PROSITE profilePS5136919.5144195IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDVLKKSLRR VKKKKTLKIF THTAPPPPQP LLPVSSNKSS NRDRHRKVDG RGTRVRLPAL  60
CAARIFQLTR ELGHRTDGQT VEWLLNHVPH SHFPSDQTSS PSLVANSVLS SSSRTEMRPR  120
KRAIPEPDSG SSSSSPAPPH TNIPPESSST TIMPPIATPP ASTAPLPPPP PMITPMTALE  180
RRRMKEEPKA AGPSSDFELF RGPDVGLGNL SFTSLLMQWD KD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2259744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.17e-22TCP family protein