PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 236aa    MW: 26664.1 Da    PI: 4.9027
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041221genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.55.6e-55601631101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   i ++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Lus10041221  60 QLQTFWADQyqeITQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 157
                  89*****99888999*********************************************************************************** PP

        NF-YC  96 vprdel 101
                  vpr++l
  Lus10041221 158 VPREDL 163
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3339154IPR009072Histone-fold
PfamPF008081.3E-2182145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.4E-3883160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDQQGQPNES TGVGTTAPVP YGIAPYQHNQ MMVQSPTQQL AQQHQLAYQH IHQQQQLQQQ  60
LQTFWADQYQ EITQTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL  120
TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKEEILAS VPRGSLPVGG  180
SAEPMPYYYL PPPAAAGMSV GRPVVDQALY GQPPYMPQQM WPHQQEEEQP PAADS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-4070160597NF-YC
4awl_C2e-4070160294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-4070160294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C3e-406116019119HapE
4g92_C3e-406116019119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010746.11e-115PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B21e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-113U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-75nuclear factor Y, subunit C9