PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 305aa    MW: 33674.4 Da    PI: 8.263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039613genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.7e-06149168120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C+ksF+r  nL+ H+
  Lus10039613 149 FSCHLCSKSFNRYNNLQMHM 168
                  89*****************9 PP

2zf-C2H215.93.7e-05233255123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  k + ++H +++
  Lus10039613 233 FMCRKCGKPFAVKGDWRTHEKNC 255
                  89*****************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-5144171No hitNo description
PROSITE profilePS5015710.762149176IPR007087Zinc finger, C2H2
SMARTSM003550.42149171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4149168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SuperFamilySSF576674.85E-6218253No hitNo description
Gene3DG3DSA:3.30.160.607.7E-5229253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572233253IPR015880Zinc finger, C2H2-like
SMARTSM00355160259282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MADPSASATS AASVGWFNFF PLTTNTSTIS TSQHYYSPLS SIDLNGPPPS TPLLIDYFSH  60
DKQKEPHYHH HNSNSTISLR IGPPPPSCVS SSTSSSSSSS SSANKTSSGS NNINPEEAAS  120
ANFSSLLGNK SEQYWIPTPT EILFGPSQFS CHLCSKSFNR YNNLQMHMWG HGSQYRKGPD  180
SLKGSQPTAM LRLPCYCCAA GCKHNIDHPR AKALKDFRTL QTHYKRKHGI KPFMCRKCGK  240
PFAVKGDWRT HEKNCGCIWY CICGSDFKHK RSLKDHVKSF GHSSRDQEDD DDEDEVDGDP  300
TVNT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011045.11e-110PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-99ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A067LGZ51e-109A0A067LGZ5_JATCU; Uncharacterized protein
STRINGLus100396130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-97C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]