PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 448aa    MW: 48820.5 Da    PI: 9.8472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037468genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002390411223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ CgksF r++ L+ H+++ +
  Lus10037468 390 TCTQCGKSF-RPEKLHMHMSRsC 411
                  6********.*********9977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061364.1E-3532181IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDVATSFNNG GMMGSNGGGG GGGGGGEFRR LHIVYFLTRM GRIEHPHLIR VRHLNRNGGV  60
FLRDVKRWMG ELRGKDLPDS FSWSYKRRYK TGYIWQDLID DDLITPISDN EYVLKGSEIT  120
TDDEIPVAVP LKETATSSPS SSSSSSTTFE MVPGSTVQSN VVSKDQEQGN HHHLEPFSVG  180
TKHYSNQSYS STGSSTSSSS PIVDRPLTTS PIVVDKTTVI GSGGDVRDSP TISPYYTYTF  240
DHRNKCQEYS SPSPTTGRCS QSPAMKSRRS WRQRYYSNAA SSRVMLRRLM VCGGAPADTA  300
GVDAVLVAVN KSTSTVQGNG TVNTQSTSAA KNRALVGTAH ELQLKLHRDQ SARRRKEESE  360
GSNRKGSSQS GLFCRKTDVS EAYRPVGAPT CTQCGKSFRP EKLHMHMSRS CRGMRKDSTA  420
SPDEEMASPT SPCKPFVKKQ LITATTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100374680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620