PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036573
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 529aa    MW: 60721.2 Da    PI: 9.0382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036573genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-051436123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Lus10036573 14 FVCEICNKGFQRDQNLQLHRRGH 36
                 89*******************88 PP

2zf-C2H215.54.8e-0590112123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H++t+
  Lus10036573  90 WKCDKCSKKYAVQSDWKAHQKTC 112
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.0E-81336No hitNo description
Gene3DG3DSA:3.30.160.601.8E-51336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0171436IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9491436IPR007087Zinc finger, C2H2
PfamPF121718.5E-51436IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM00355985585IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-578111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.0E-885111No hitNo description
SMARTSM003559490110IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTTTEV RKRVYICPEP  60
TCVHHNPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHQK TCGTREYKCD  120
CGTIFSRRDS FITHRAFCDA LAEENNKVNQ QGLMSNNNNN NQMADLMSPN SSSAAGDFNA  180
SFDPKNPLKS LPQDLIPMPF KPMNMGAAGG MFSTSSGTLF GGPRGGGNNG GMPTSXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAAA TENGWRRDDE  480
SLSAAAAATV AWGIGCWVGE AYLGCLIFYI RFLISVWFFW VYDYDDFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3386158372Zinc finger protein JACKDAW
5b3h_F1e-3386158372Zinc finger protein JACKDAW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100365731e-152(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.13e-84C2H2-like zinc finger protein