PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 272aa    MW: 31313.8 Da    PI: 9.2174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036194genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.82.6e-46261552128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.. 95 
                   pGfrFhPtdeelv +yL++kve+k l++ ++ik +d+yk++Pw+Lp +  ++e+e+y+F++r +ky+++ r+nr+t+   g+Wkatg dk+++s   
  Lus10036194  26 LPGFRFHPTDEELVGFYLRRKVEKKALKM-DIIKLCDVYKYQPWELP-RGGEGEREMYYFCRRGRKYKNSVRPNRVTTagCGFWKATGIDKSIYSGgg 121
                  59***************************.99***************.5567899********************76634689************976 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ +vglkk+Lv+y+g+a kg+ktdW+mhe+rl
  Lus10036194 122 gDRVVVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 155
                  66667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-4918174IPR003441NAC domain
PROSITE profilePS5100549.6125174IPR003441NAC domain
PfamPF023656.2E-2427155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEDEKLKLMM MKRRNGAVSV DDDVSLPGFR FHPTDEELVG FYLRRKVEKK ALKMDIIKLC  60
DVYKYQPWEL PRGGEGEREM YYFCRRGRKY KNSVRPNRVT TAGCGFWKAT GIDKSIYSGG  120
GGDRVVVGLK KSLVYYRGSA GKGTKTDWMM HEFRLPPSNG YEAEVWTLCR IFKREASCRK  180
YAATVQKRPV SYRKRSAAVE NHGYYNSSND MVPVGQLMAM DFKCFPNGSS CSNGEQYEAE  240
ESLEEGKWDE LRPMVDFALL DHHHHHSIFF T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-422718019171NO APICAL MERISTEM PROTEIN
1ut4_B2e-422718019171NO APICAL MERISTEM PROTEIN
1ut7_A2e-422718019171NO APICAL MERISTEM PROTEIN
1ut7_B2e-422718019171NO APICAL MERISTEM PROTEIN
3swm_A2e-422718022174NAC domain-containing protein 19
3swm_B2e-422718022174NAC domain-containing protein 19
3swm_C2e-422718022174NAC domain-containing protein 19
3swm_D2e-422718022174NAC domain-containing protein 19
3swp_A2e-422718022174NAC domain-containing protein 19
3swp_B2e-422718022174NAC domain-containing protein 19
3swp_C2e-422718022174NAC domain-containing protein 19
3swp_D2e-422718022174NAC domain-containing protein 19
4dul_A2e-422718019171NAC domain-containing protein 19
4dul_B2e-422718019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036194
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753414.12e-85PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK555e-71NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U8PT095e-84A0A1U8PT09_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGLus100361940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-73NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]