PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 313aa    MW: 33105.9 Da    PI: 4.8702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035994genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022188209223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ C+k F+++     H+r+H
  Lus10035994 188 VCQTCHKLFRSWKAVFGHMRMH 209
                  6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHTWFLFIFC VLFLCFPPPA VIVMPKTNTH PSSSSEDDTN SAPTSPRLSP AAIAAAEAAT  60
SALNLERSGE QQGTVAPVSQ AATVATTTVP PPPPPPAARG PHGVGVRISI SEAGEGSIRW  120
RPSASSVWSA PAAIPPTTAN PLPMSPNSIT TATALLEQAF QQPPPPPQEP TSNKRQRGEM  180
DVPSGPPVCQ TCHKLFRSWK AVFGHMRMHK ERTYRGAFPP PVSSDGCSSS NTIAATTPPR  240
RRGLEIDLNI QFNPDEDIDV HDQQEDQALT TPPPPPPALE PASIDLNEPA AANKSDEKEG  300
DGSTSNNDES NE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100359940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.18e-15C2H2 family protein