PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035055
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 297aa    MW: 33640 Da    PI: 8.2718
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035055genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.42.9e-431042373135
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssgkaaksaaksk 98 
                  gkkdrhski+T++g RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL++++k ai++l  +  ++ s s c++ s ++ + +s +++ +++++ + 
  Lus10035055 104 GKKDRHSKIYTAKGARDRRMRLSLPVARRFFDLQDMLGFDKASKTIEWLFTMSKSAIQDLQIDvcTTCSTSTCSEISTEVVVMSS-AKSTNRNKKDKM 200
                  89***********************************************************999755555667444444444422.223344444455 PP

          TCP  99 ksqksaasalnlakesrakarararertrekmriknk 135
                  +s  +++++  ++ke+r karararert+ek+++k+k
  Lus10035055 201 ESCIPSTKHCPISKETRDKARARARERTTEKKNKKKK 237
                  55555666789*********************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-38104234IPR005333Transcription factor, TCP
PROSITE profilePS5136935.333105163IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.843214231IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MFIPNLPTDT LNPNQPPTAT SSASLTSLVN EDHYYHFSPN PFLSYAPNHD FLDDLSPIIL  60
DHDQDHPLPP PPQIPEEEEE EEEMKKNKRS EGKVIRKRST SRGGKKDRHS KIYTAKGARD  120
RRMRLSLPVA RRFFDLQDML GFDKASKTIE WLFTMSKSAI QDLQIDVCTT CSTSTCSEIS  180
TEVVVMSSAK STNRNKKDKM ESCIPSTKHC PISKETRDKA RARARERTTE KKNKKKKMLE  240
ESNYYYDEEQ CPPCSISLKN PISTALPSSS SSLGLDSGGS ELFMIMGSQY WQQVFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-13110163154Putative transcription factor PCF6
5zkt_B4e-13110163154Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100350550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-25TCP domain protein 12