PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035044
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 322aa    MW: 36210.3 Da    PI: 6.4579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06127146120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  n++ H+
  Lus10035044 127 FSCPVCTKTFNRYNNMQMHM 146
                  89*****************9 PP

2zf-C2H214.79.1e-05212234123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +CgksF  + + ++H +++
  Lus10035044 212 FGCRKCGKSFAVRGDWRTHEKNC 234
                  56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-5123149No hitNo description
SMARTSM003550.085127149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-6127146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.951127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SMARTSM00355220175207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.34E-6195232No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5199232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573212232IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MQAPPFMTYI SSADHESSTL CCIEEEADLE QDRAREDSLL LLSLAPPGQQ QQHITTITKQ  60
PIKNHDPSST TIPSPSSDAG VTVALHIGPP PPPPTPTITS NHLGSATPPL EFWIPSPSQI  120
LVGPTQFSCP VCTKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKPASSML RLPCYCCAEG  180
CKNNIEHPRS RPLKDFRTLQ THYKRKHGVK PFGCRKCGKS FAVRGDWRTH EKNCGKLWFC  240
ICGSDFKHKR SLKDHVRAFG DGHSPHTVDS LDHIDHVNEE DGDEEEEEEE EEEDSYEERE  300
DHDYGQRYST SIIGHRGPFS Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299830.11e-128zinc finger protein WIP6
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2N9F1Q51e-131A0A2N9F1Q5_FAGSY; Uncharacterized protein
STRINGLus100350440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-109C2H2-like zinc finger protein