PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034679
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 360aa    MW: 39373.7 Da    PI: 7.144
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.92.8e-2883190366
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................... 65 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+++    i++l+ +                                   
  Lus10034679  83 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLIENTSDDIDKLPPLqlphsfgfeaasgggghlhqyynsslahmapffdf 180
                  78*************************************************************66666666666666666666665555555555555 PP

          TCP  66 .........s 66 
                           +
  Lus10034679 181 grpgtststN 190
                  4443322211 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.51984142IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2384179IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRRVPMKKDQ MEEQEGGAKQ EDNVGDHHQQ ENILTANLMN QPRTTAAAPP GGGSSSSTSR  60
STTSSQWSAF RNPRIVRVSR TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG  120
LGQPSKVIDW LIENTSDDID KLPPLQLPHS FGFEAASGGG GHLHQYYNSS LAHMAPFFDF  180
GRPGTSTSTN TSASSSSGTS GLFDQQHLNS LYQWGDHHHN QNHYQNQLPI LGLGNNYGHD  240
HNHVSSSSGG SGGGGANFFL PSSYLALSNN TTNSASTSTT NSPHDQPTTM LMPPPPQPYS  300
AYNNQLEMMS DNHHQNYQRQ QQQLHFQNAT TTRPTPHFPF NIFNADNDHD DHGGGSSGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1989143155Putative transcription factor PCF6
5zkt_B1e-1989143155Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100346790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5