PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034612
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 474aa    MW: 51487.2 Da    PI: 5.992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034612genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059120142123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+Cg+ +++ ++   H  ++
  Lus10034612 120 FECPICGQAYRSEEDVSAHVESC 142
                  89*****************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.904.4E-82653No hitNo description
CDDcd092128.60E-20191271No hitNo description
SMARTSM005801.9E-16192256IPR018997PUB domain
SuperFamilySSF1435031.31E-17192257IPR018997PUB domain
PfamPF094092.0E-14194255IPR018997PUB domain
SuperFamilySSF542361.45E-11338448IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.4E-8352415No hitNo description
PROSITE profilePS5003310.095364448IPR001012UBX domain
PfamPF007898.5E-5364414IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDDMKDKFKG FVKKVNTQLS SSSSSGKFKG QGRVLGTNSS SSSSSSDSSN SVYARFSQPV  60
NPKPTSNPSS NSNSKPSPPK RSAPTSSSAP IPKPANGFDA FGPLITSSER SKNGYSLNVF  120
ECPICGQAYR SEEDVSAHVE SCVTEGVRVV DVTSGGGDDN INAVSDGKID EEASFLDESS  180
VAAYLSGKPP EGSVEVVLRL FRNIVKDPEN VKFRRVRMGN PKIREAVTDV AGGVELLELA  240
GFELKEEGGE MWALMEDVPG KERIGLISKV IGFLEPRKVE NIKASVVPVE EDQPAERKKI  300
DRQIKVFFAV SENVASKIEV PDSFYNLSAI ELKSEADMRK KKLAESQLLI PRSFREKQAK  360
AARKKYTRTI VRIQFPDGVV LQGVFAPWEP TTALYEFVGS ALKDSSLEFE LMHPVIVKRR  420
VIPHSAAAGG RSITLDDEDL VPSALIKFKP IETDSSVFTG LSNELLEISE PLT*
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034612
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021687190.10.0plant UBX domain-containing protein 2-like
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A2P2JET90.0A0A2P2JET9_RHIMU; Uncharacterized protein
STRINGLus100346120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]