PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034072
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 433aa    MW: 48943 Da    PI: 6.1341
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034072genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.9e-341492693105
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....sec..eaesssssasnsssg..... 88 
                  +kk rhski T+ g RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl  ++pai  l +++ +++     +e   e++++   +++++++     
  Lus10034072 149 KKKERHSKIETASGVRDRRVRLSIATSRKFFDLQDMLGFDKPSKTLDWLLSHSEPAIHRLQQLQLEQHptgdiMELenEDDEEDGDDDHDQEHeplll 246
                  79*************************************************************44444222222222222222222222222255666 PP

          TCP  89 ........kaaksaakskksqksaa 105
                          +  ++ +k k++q++++
  Lus10034072 247 nqhlqgraR--ETRTKDKQQQQQQQ 269
                  666665432..22222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-34149271IPR005333Transcription factor, TCP
PROSITE profilePS5136930.71150208IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MFSSSGDGDV NNNNNNSSSP FRQLLQSGCS STMSDDQSRS RGLSSSSPYL MMFDDPEITT  60
TDQNTYPYPP NNNHGQLMTL PFLLPTYPYY NNNNIYPHLP PPPPPSVISC NYDCNNNNNP  120
NEMLTMMMMM SGGGSSSNST STMTMTTKKK KERHSKIETA SGVRDRRVRL SIATSRKFFD  180
LQDMLGFDKP SKTLDWLLSH SEPAIHRLQQ LQLEQHPTGD IMELENEDDE EDGDDDHDQE  240
HEPLLLNQHL QGRARETRTK DKQQQQQQQQ QQEPFGIGRV ISNSYNSLFT TATTTPPAST  300
QIDYESFTLM KWHLKHPESS LTTLATKNHA IPSPIFPHRH HHHHHQDSAN CTTTASTWDI  360
NASTGNYIIF SVSSDPKLHN CYSFVSTSLL ELLGSEGVQI GFICTYATTY RIGYAGLQLN  420
GRFWEERDHR NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-15155208154Putative transcription factor PCF6
5zkt_B9e-15155208154Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100340720.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-23TCP family protein